Full list of publication is available on
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Arghya Chakravorty, Zhe Jia, Lin Li, Shan Zhao, and Emil Alexov. (2018). Reproducing the ensemble average polar solvation energy of a protein from a single structure: gaussian-based smooth dielectric function for macromolecular modeling. Journal of chemical theory and computation, 14(2), 1020-1032.
June 16 2019
Yunhui Peng, Lexuan Sun, Zhe Jia, Lin Li, Emil Alexov. Predicting protein–DNA binding free energy change upon missense mutations using modified MM/PBSA approach: SAMPDI webserver. Bioinformatics. 2017 Oct 28;34(5):779-86.
June 16 2019
Hoffman, L., Li, L., Alexov, E., Sanabria, H., & Waxham, M. N. (2017). Cytoskeletal-like Filaments of Ca2+-Calmodulin-Dependent Protein Kinase II Are Formed in a Regulated and Zn2+-Dependent Manner. Biochemistry, 56(15), 2149-2160.
June 16 2019
Li, Lin, Zhe Jia, Yunhui Peng, Arghya Chakravorty, Lexuan Sun, and Emil Alexov. DelPhiForce web server: electrostatic forces and energy calculations and visualization. Bioinformatics (2017).
June 16 2019
Zhe Jia, Lin Li, Arghya Chakravorty, and Emil Alexov. Treating ion distribution with Gaussian‐based smooth dielectric function in DelPhi. Journal of Computational Chemistry (2017).
June 16 2019
Chakravorty, Arghya, Zhe Jia, Lin Li, and Emil Alexov. A new DelPhi feature for modeling electrostatic potential around proteins: Role of bound ions and implications for Zeta-potential. Langmuir (2017).
June 16 2019
Lin Li, Arghya Chakravorty, Emil Alexov. DelPhiForce, a tool for electrostatic force calculations: Applications to macromolecular binding, Journal of Computational Chemistry 38.9 (2017): 584-593.
June 16 2019
Brandon Campbell, Lin Li, Emil Alexov, & Ohshima, H. (2016). Dielectric Properties of Biological Macromolecules and Biomolecule-Water Interfaces. Encyclopedia of Biocolloid and Biointerface Science 2V Set, 380-390.
June 16 2019
Book Chapter
Arghya Chakavorty, Lin Li, and Emil Alexov. Electrostatic component of binding energy: Interpreting predictions from poisson-boltzmann equation and modeling protocols. Journal of Computational Chemistry 37.28 (2016): 2495-2507.
June 16 2019
Lin Li, Joshua Alper, and Emil Alexov, Cytoplasmic dynein binding, run length, and velocity are guided by long-range electrostatic interactions, Scientific Reports 6 (2016).
June 16 2019